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SRX23872393: GSM8135399: WTCW2; Penicillium oxalicum; RNA-Seq
1 BGISEQ (BGISEQ-500) run: 21.8M spots, 6.5G bases, 1.8Gb downloads

External Id: GSM8135399_r1
Submitted by: State Key Laboratory of Microbial Technology, Shandong University
Study: FaiR regulates the development of Penicillium oxalicum fungi and the expression of cellulolytic genes
show Abstracthide Abstract
The goals of this study are to compare different gene expressions for Penicillium oxalicum wild type strain (WT) and FaiR deletion strain (DfaiR) under conditions of 1% bran + 1% microcrystalline cellulose as carbon source. The results of correlation analysis between each sample showed that the gene expression level of DfaiR was significantly different from that of the WT strain. The deletion of DfaiR significantly down-regulates the expression levels of sporulation process genes. And the absence of DfaiR can broadly up-regulate the expression level of cellulase-encoding genes, indicating that DfaiR can cause a decrease in cellulase synthesis by affecting the expression of cellulase-encoding genes. Overall design: Examination of differential gene expressions by digital gene expression tag profiling in Penicillium oxalicum wild type strain, faiR deletion mutant strain in 18h in modified Mendal's medium with 1% bran + 1% microcrystalline cellulose as carbon sources. Three replicates were included for each samples.
Sample: WTCW2
SAMN40301000 • SRS20691512 • All experiments • All runs
Library:
Name: GSM8135399
Instrument: BGISEQ-500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted, and oligo (dT) beads were used to purify mRNA and guide double-stranded cDNA synthesis. The enzyme NlaIII was used to cut the cDNA at CATG sites. After Illumina adapter 1 was linked to the CATG site, MmeI was used to cut at 17-bp downstream of the CATG site. Then Illumina adapter 2 was linked at 3' end and the fragments were PCR amplified. Finally, the 85-bp strips were gel purified and digested for Solexa sequencing. Each tunnel generated millions of raw reads with sequencing length of 50bp. RNA libraries were prepared for sequencing using standard Illumina protocols
Runs: 1 run, 21.8M spots, 6.5G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR2826216121,754,3636.5G1.8Gb2024-03-13

ID:
32177118

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